Certain burrito enthusiasts may balk at the idea of going without guacamole, but a potential avocado shortage shouldn't affect one of the restaurant world's hottest stocks, CNBC's Jim Cramer said Wednesday.

Last month, Chipotle Mexican Grill told investors the popular restaurant chain could temporarily suspend serving guacamole, plus one or more of its salsas, because of rising food prices attributable to "global climate change." The chain added that such a move had the potential to hurt sales and tarnish its brand, but the alternative would be passing on the cost to its patrons through menu prices.