KEY POINTS
  • Alaska struck a $2.6 billion deal to acquire Virgin America in April 2016.
  • Alaska became the fifth largest airline in the U.S., serving over 44 million passengers in 2017.
  • Pilots that fly routes from JFK, Newark and LaGuardia, will relocate and deploy from West Coast hubs this fall, although the airline will still serve that market.

Alaska Airlines plans to close its New York pilot base in September to reinforce its West Coast fleet, asking more than 100 pilots to relocate to California in a matter of months.

Alaska struck a $2.6 billion deal to acquire Virgin America in April 2016 and grew Alaska into the fifth largest airline in the U.S., serving over 44 million passengers in 2017.

Pilots that fly routes from New York area airports, John F. Kennedy International Airport, Newark Liberty International Airport and LaGuardia Airport, will relocate and deploy from West Coast hubs this fall. The company's aircraft will still serve New York.

Prior to the merger, Virgin America competed with established airlines on this transcontinental route for over a decade, by advertising as the cool, alternative airline of Silicon Valley.

"This was a difficult decision — but a necessary one — based on the need to match our pilot staffing with the geographic areas on the West Coast where we deploy our aircraft every day. All of our JFK-based pilots are being offered the opportunity to transfer to either Los Angeles or San Francisco," a spokesperson for the airline told CNBC via email. Alaska offers 14 flights a day to JFK and the company says it will add another in July.